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Guide to IMMUNOPHARMACOLOGY Help Page

IUPHAR Guide to IMMUNOPHARMACOLOGY Help Page

Background

These help pages describes the specific pages and content developed for the Guide to IMMUNOPHARMACOLOGY (abbreviated as GtoImmuPdb), how they are structured, and how users can access them and search for GtoImmuPdb data. For more detailed information about the Guide to IMMUNOPHARMACOLOGY please visit the GtoImmuPdb About page.

For more information on the parent Guide to PHARMACOLOGY visit the GtoPdb About, FAQ and Help pages. These include information on nomeclature terms, symbols and data downloads.

Tutorial

A tutorial for using the Guide to IMMUNOPHARMACOLOGY portal and guidance on navigating the website from the portal is available to download as a PDF.

Contact us

If you would like to get in touch with any comments, questions, error reports and suggestions please email us.

How to cite

Please refer to this page for details on how to cite the information contained in the Guide to PHARMACOLOGY and the Guide to IMMUNOPHARMACOLOGY

Guide to PHARMACOLOGY Main Site Help Page

The Guide to PHARMACOLOGY Help Page provides more extensive help on using the website and understanding its contents. Please refer to this for information beyond the scope of specific Guide to IMMUNOPHARMACOLOGY features and data. Please note this will take you away from the GtoImmuPdb focussed pages.

The Data in the Guide to IMMUNOPHARMACOLOGY

Immunological Process Data

GtoImmuPdb contains data detailing immunological processes and their associations to GtoPdb targets.

GtoImmuPdb has defined its own set of top-level immunological process categories against which targets in the database can be annotated and which form the basis of organising, navigating and searching for immunological processes and associations. In addition, GtoImmuPdb uses terms from the Gene Ontology (GO) to help annotated targets to these categories.

Full documentation can be found in this GtoImmuPdb immuno process data documentation (PDF).

Excel speadsheet listing annotations of GtoPdb targets versus immuno process categories: UniProt_GO_Annotation_in_GtoImmuPdb.xls

Cell Type Data

GtoImmuPdb contains data detailing immunological cell types and their associations to GtoPdb targets. The Cell Ontology provides the formalised vocabulary against which we annotated target to cell type associations

GtoImmuPdb has defined its own set of top-level immunological cell type categories against which targets in the database can be annotated and which form the basis of organising, navigating and searching for immunological cell types and associations.

Full documentation can be found in this GtoImmuPdb immuno cell type data documentation (PDF).

Disease Data

GtoImmuPdb contains data detailing diseases and their associations to GtoPdb targets and ligands. The database currently maps these disease terms to 3 external resources: OMIM, Orphanet and the Disease Ontology. These resource help provide a formalised vocabulary against which we can annotated targets and ligands to diseases.

Full documentation can be found in this GtoImmuPdb immuno disease data documentation (PDF).

Downloading Data and Documents

GtoImmuPdb Tagged Data

Immunological Process Data

Excel spreadsheet showing mappings of GO process terms to GtoImmuPdb process categories GtoImmuPdb_GO_Process_Mappings.xls

UniProt GO Annotations in GtoImmuPdb (CSV files)

Immunological Celltype Data

Cell Ontology Annotations in GtoImmuPdb (CSV files)

Downloads for 2017.5 release - NAR 2018

Other Downloads

To download data from the main GtoPdb database please visit its downloads page.

GtoImmuPdb Content