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nilofabicin   Click here for help

GtoPdb Ligand ID: 10984

Synonyms: CG-400549 | CG400549
PDB Ligand
Compound class: Synthetic organic
Comment: Nilofabicin is an antibacterial compound that functions by inhibiting bacterial enoyl-ACP reductase (FabI) [2]. It has no activity against Gram-positive bacteria.

nilofabicin is commercially available from our sponsors

2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/). All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 1
Hydrogen bond donors 1
Rotatable bonds 6
Topological polar surface area 85.49
Molecular weight 340.12
XLogP 3.22
No. Lipinski's rules broken 0

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)

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Canonical SMILES Nc1cccc(c1C)Cn1ccc(cc1=O)OCCc1cccs1
Isomeric SMILES Nc1cccc(c1C)Cn1ccc(cc1=O)OCCc1cccs1
InChI InChI=1S/C19H20N2O2S/c1-14-15(4-2-6-18(14)20)13-21-9-7-16(12-19(21)22)23-10-8-17-5-3-11-24-17/h2-7,9,11-12H,8,10,13,20H2,1H3
InChI Key YCLREGRRHGLOAK-UHFFFAOYSA-N

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
Classification Click here for help
Compound class Synthetic organic
IUPAC Name Click here for help
1-[(3-amino-2-methylphenyl)methyl]-4-(2-thiophen-2-ylethoxy)pyridin-2-one
International Nonproprietary Names Click here for help
INN number INN
11522 nilofabicin
Synonyms Click here for help
CG-400549 | CG400549
Database Links Click here for help
Specialist databases
Antibiotic DB Antibiotic DB Database logo Nilofabicin
Other databases
BindingDB Ligand 231620
CAS Registry No. 934628-27-0 (source: Scifinder)
ChEMBL Ligand CHEMBL488937
DrugBank Ligand DB12347
GtoPdb PubChem SID 405560425
PubChem CID 11844916
RCSB PDB Ligand PT6
Search Google for chemical match using the InChIKey YCLREGRRHGLOAK-UHFFFAOYSA-N
Search Google for chemicals with the same backbone YCLREGRRHGLOAK
Search PubMed clinical trials nilofabicin
Search PubMed titles nilofabicin
Search PubMed titles/abstracts nilofabicin
UniChem Compound Search for chemical match using the InChIKey YCLREGRRHGLOAK-UHFFFAOYSA-N
UniChem Connectivity Search for chemical match using the InChIKey YCLREGRRHGLOAK-UHFFFAOYSA-N

Product suppliers

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MedChemExpress
Nilofabicin (links to external site)
Cat. No. HY-111071